With a “-q” parameter, the installation package will automatically choose all default settings. For this to succeed, your execution environment must already have sufficient privileges to install software (e.g., for Windows: administrator priveleges). The installation process can be automated and made silent by executing the installation package with the “-q” command parameter (e.g., “Cytoscape_3_8_0-RC1_windows_64bit.exe -q”) from a command line or script. This will bring up a wizard that will lead you through the process, presenting choices for the installation directory, license agreement, file associations and privacy settings. The easiest and most common way to install Cytoscape is by executing an automatic installation package downloaded from the Cytoscape web site.
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